Scaffold Ga0310127_015087

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_015087
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5110
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F055681	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_015087_1189_1389	F001120	N/A	MTQKKSPINFDKTIAGFNVTERGVKSYTKSIKLGPFQVTFNARESGVHGSISIPGTGLSKRNIKLL
Ga0310127_015087_1771_1989	F001165	N/A	MSALNDTPKLRIPDSVDLQRLQAMQLVAKMKESADRHGIGFVGGFVSPDGQKFMMTNMDEADTQMLLPDDLR
Ga0310127_015087_346_546	F055681	N/A	MIGFSIEFKRWYLVIRGPKGRVYSAFGFANQMPVMLPDRSITLDEYLEDRDDQIIFTSNGKEIMRF