Scaffold Ga0310127_014658

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_014658
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5214
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007111	Metagenome / Metatranscriptome	357	N
F007855	Metagenome / Metatranscriptome	343	N
F020667	Metagenome	222	Y
F021095	Metagenome	220	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_014658_2733_3860	F021095	N/A	MLFKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNYGFFDVAKVVETLIAPTKPSLTQTGFVDHAGYYSGYRLDFMEEYGNTPVVYTGTVTTVSGNVSFAGNLEQLEFQDWTISPYFRIGQSFPSTRALTSQRAFTVYHGGNAWLAINATKYQAVAPNDTWLVSGQVTYKGVDYDIAVNPSLSGTTDFNIQRFACGPAQLSGTIAALSGAVEGDSYTVRFYSSTTAQSAGNVVTFTFGPCERFNSIPVHFQNKYGGIDSYTFTLKNRKRANITRQTFGYNSDVYATTTYDKVWSGEFDYVYALTSDWLTDAESAWLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNTIL
Ga0310127_014658_373_2736	F020667	N/A	MSVTLIAYPTADYTTDLQAWNAFNDRADADGAEPREDACFGCLFSTFATLYDQPELAYVLDTMGEIDIALTYSISDIEDVTKQRGSFSKTIQLPNTATNRECFGYAYNIQSFVGGFQPNKRIRAAMWEDGVQIFSGVLQLLSMAKIKGQVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHVPNSGHVSGTWTASGTASSGYVYGLVDSAGFSDTIVPTQGAGWFQAPWWRLGPSIYVKKMVDLIFAEAGFRYSSNFFNSATFGKLVMPYAAGVMPVNLSGSNAFTQSTGTVLCANGTTQVLSFPKETAPFFDNGGYWVASSSTFVAPADVPTRWNIELSLNIGNVTGSTSMLSNIALYNLTTSGNIVNLQSRQGFANRNMRINMQNVTFPAGARVQVRAEQLALFGISFQVLSGSTVQFTCLENPVSIGTLDMRTALPADVKQSDLLADLQKMFNLQFMPDPQDPKLLYIEPWVDFYASGSVDWSQKADENEEQVITNGDPNAYTNMIFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTGNFYGKNDKVVETVAGTLIPASFATDKIVGRTWDLEGPEASGTIKPLQTGYRLAQYNLITGLSEWAYQYGVSGSTALSVGILQLPFISHIDNPYAPTMDLAFGQPRTVFYNAVNASGNFVNYTNNNLYNKYWLNYISETVSSEALQLELTMMISPADIYQLDFRKPIYYGGIRWRLLEVRDYLVGQMKPCRVTLRRILNLAEFAPTSTTPIANDPSARYNGPIDPDPVDPGYEPPVNPELPSEG
Ga0310127_014658_3919_4569	F007111	N/A	METTILANGKPVNKFGSGSMKGIDQTALEGIGSIVGPKGGGKSPAHDVLVKWVARVIELAKKNLEAANANAGGTLSASIAPEDIELSAKQIVVAIMANPYWKYVDRGVHGRTSSYLSARGSKFRYDKKIPPPQAIADWIANKGIPVVPTYSRKLERMRTKQEQGLVMGRSIAFAIRERGIEGTKFMSNALSPEMIDVLVNTIAETLGKSVSLSTKL
Ga0310127_014658_4927_5199	F007855	N/A	MDINTTDEKQLLQNLHRIMASLSREGGLFGFFPKKYDGAAHAERAELFKKHAKVGDVWGVVSFFLLSSESYLKILSDYSKHLMTKAGELT