Scaffold Ga0310127_012974

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_012974
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5725
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004666	Metagenome / Metatranscriptome	428	Y
F014250	Metagenome / Metatranscriptome	264	Y
F015988	Metagenome / Metatranscriptome	250	Y
F018162	Metagenome / Metatranscriptome	236	Y
F018349	Metagenome / Metatranscriptome	235	Y
F095357	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_012974_1935_2090	F018349	AGGAGG	MDYREGFEDGVRFTREVIINNIRKWAETHEDGETLDWVADQIEFGTLDNDL
Ga0310127_012974_2370_2696	F018162	AGG	MLGKLADAVIAARPRWQDPAYATRIAISQIVGNQWDMETGFGLHVNEISDNEHKIAIIDWEQQTFSLHEEDDHRNTDNKVRGMKNEAIFTMDLSTFCEKYALEGMLVN
Ga0310127_012974_3988_4209	F015988	GGAGG	MESEYVRRTGQLKEYIKLHIISLEQDLEGISEQMESLDPASKDYNELDFEYNHWSGQLLSARHILSVVEDILG
Ga0310127_012974_4206_4493	F014250	GGAGG	MMNSAYLPERLQKLIDIGESGTNILHGQLKVLMLEAEEQLALAQEEEDRTEEAMDSMERKYWEGVLDALGDVYALTYQLAFAIDERTKKNENRIS
Ga0310127_012974_5185_5331	F004666	AGGA	MTTKREYLVSKGITVGRRGRFSAAAKQALSEAEKNGIKFTAETKQAKN
Ga0310127_012974_5425_5709	F095357	AGGCGG	MNSKEIKVGELLANSVEDHWFNPATLGHYLSQQPNWTIDRVMELVLWIIEKNAGVYKAKAGKQEISEGLAIAYTLDQMVNRIKEVNNFQHIRIP