Scaffold Ga0310127

Basic Information
Taxon OID	3300034072 Open in IMG/M
Scaffold ID	Ga0310127_012610 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034072 Open in IMG/M

Scaffold ID

Ga0310127_012610 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5858
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (20.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5858

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (20.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001981	Metagenome / Metatranscriptome	608	N
F003660	Metagenome / Metatranscriptome	474	Y
F010395	Metagenome / Metatranscriptome	304	N
F010464	Metagenome / Metatranscriptome	303	N
F014844	Metagenome / Metatranscriptome	259	Y
F074587	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_012610_206_385	F014844	N/A	MLIGYGYGYPTNQLLGGVSDPALTAWNAFNARATADGATAAEAAVNACLFARFAAIFNF
Ga0310127_012610_2197_2472	F010464	AGG	MNLIETSIVGTIAAIVGGAVAWFTKGRFESDSLQVKQAQAVLAMWQATAEAQNKELVELRNEVVSLRQRLEEMEHTIHDLQSENAKLKNLV
Ga0310127_012610_3_203	F074587	N/A	KNYDFLVVNAATEFSALTGTNSEDLLTAYALSGKTVSAGIVISGRNGGKIIAVDVSSGSVIGYTFL
Ga0310127_012610_3755_4012	F010395	N/A	MPEYHSLRPAKALTNALERLMIAIDNADLEGNHVLLCEYRKACELLGYDPAMAQWATHNEVNLSSGPDVADPVAVNYFHKLNPEE
Ga0310127_012610_4448_4567	F003660	N/A	MNHETKAKLEAALVTGYIMLATILGIAFFGRFLFALITN
Ga0310127_012610_5451_5858	F001981	N/A	MTYPTLVTIPKSDICKAEIAQIAQQLTDRINEGEVNPIEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFQAFGAEVTLKEGSLTPNYEEDEVYADLKAQMKAREELLKIAFRQAGKTAIFDESTGEQIPVCT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310127_012610

Overview

Ecosystem & Geography

Associated Families

Sequences