Scaffold Ga0310127

Basic Information
Taxon OID	3300034072 Open in IMG/M
Scaffold ID	Ga0310127_010587 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034072 Open in IMG/M

Scaffold ID

Ga0310127_010587 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6655
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6655

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001322	Metagenome	722	Y
F013317	Metagenome / Metatranscriptome	272	Y
F019642	Metagenome / Metatranscriptome	228	Y
F043835	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_010587_3723_3914	F019642	N/A	MPTEVAGFIASVLGSIGLLIAGLRYIIKLENLPLISRLDKLESTLETALRERVVSASAKKTRR
Ga0310127_010587_4296_4532	F013317	N/A	MIEKHKWEFLADIRARTGSRTLYINATPQGVYEFDLGALNEPEWVLKVLPTKTDFANSQKVEKPVGFLHIEESRLLLI
Ga0310127_010587_5558_6160	F043835	GGAGG	MSNYLDDYVGVQDRLRTFIKDFPDYRIKTHCLAESLVKECDVYIVKVELYRTEADPNPFATGLSTESKSKQYALELAETGALGRALNLAGYYAKPTTSKPFQSHSKPIQTTSKQLGEFVKERRPDDPAPIVHNIEHLIETLGAEIVDEVPICNHGAMVLKTGVKDGNEYRGWVCPARDRDAQCPAKWMKIDSDGKWVFKK
Ga0310127_010587_783_2030	F001322	AGGCGG	MTLWNPEYRIKVNGSTKTSATLSGLTITSGRIDIYSQPIAGYCNLTLIETNESAVDFEINDSVTVEVKDSTGTFVNLFGGFITDLTVQVQTSGSTATSQRINIIAVGALARLSRAVFEGNLASDYDGNQIYAVLEGILFDRWNEVPAATQWNTYAPTTQWQDAENTGLGEIDRPGDYELDSQNNLNDTAYNIAARLATSGLGYLYEDAQGRIGYADSTHRSQYLAANGYVDLDGNHAFGPGLAIIKRAGDVRNAITIAYTSSGNSTHTEEDAASIALYGQLATTISTTLKNQTDAEDQALFYLDLRAYPQFQLRQISFPVGSTEIDNTDRDSLLNVFMGMPVNITNLPGNMVNGEFQGFIEGWTWTASLGRLDLSMNVSPVAFSLQAFRWNSVPVTEYWNTLSNTLEWIDATIVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310127_010587

Overview

Ecosystem & Geography

Associated Families

Sequences