Scaffold Ga0310127

Basic Information
Taxon OID	3300034072 Open in IMG/M
Scaffold ID	Ga0310127_008129 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034072 Open in IMG/M

Scaffold ID

Ga0310127_008129 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8149
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (23.53%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8149

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (23.53%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F006621	Metagenome / Metatranscriptome	368	Y
F008996	Metagenome	324	N
F009126	Metagenome / Metatranscriptome	322	N
F035673	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_008129_1296_1865	F000557	N/A	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRIGVVSIVEGVDVSLVREMPAKAVLKRYKAIVSEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDINTTDEKQLLQNLHRIMASLSREGGLFGFFPKKYDGAAHAERAELFKKHAKVGDVWGVVSFFLLSSESYLKVLTDYSKHLMTKAEGLT
Ga0310127_008129_1862_2596	F008996	N/A	MKLLANIAYHHNPERIPNLIRVIEAIKSYPVQADIFVDTNDPEVVGLLADQPVTVHAHTQLAHPWALTAIHRTRIKETYKYFDWVAYFEDDMMLPKEGFVNFTEQFDLMFADGLYPSFTRIETYDDKEGECTPDINQDLPSSVWCQWNGKDYVSLPYYINYHAFWMFSVKRLKEVLTRNPGELDHIPNNGLYRESLASFPIWSLNLKPMLEFTEQGELAEHCKVFHLTNNYKHGSRDIKTIFKR
Ga0310127_008129_2_487	F009126	N/A	MAVTVLSGSPLVATPVYNKMLFKVSGSQIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVAKVVETLVAPTKPSLTQTGFVDHAGYYSGYRLDFMEEYGNTPVVYTGTVTTVSSNVSFAGNLEQLEFQDWTISPYFRIGQSFPSTRALTSQRAFTV
Ga0310127_008129_5625_5816	F006621	GAG	LANSKAKDDSEAQVQARMDSLMMVITTLCDCIGAVDESNAPNAFAVKMKIVDKIDELIDKIEY
Ga0310127_008129_6242_6679	F035673	N/A	MVLCFALRQAEAFFVHDLLRLLDGGLADPANLPMVLGSYPRPCLIRHRNHYPGMDLQMTTEQFIVAQKHRKYWDQYIASLTMRLPPDAVAELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFAETNQNTVTIPLSNAPTNP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310127_008129

Overview

Ecosystem & Geography

Associated Families

Sequences