Scaffold Ga0310127_006289

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_006289
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9856
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F002241	Metagenome / Metatranscriptome	579	Y
F004233	Metagenome	447	Y
F005585	Metagenome / Metatranscriptome	395	Y
F014016	Metagenome / Metatranscriptome	266	N
F014613	Metagenome / Metatranscriptome	261	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_006289_1118_1312	F002241	GGA	MSKPHSIRYIRQLMEWGFDKEFIAKDCGINLESLETRLRRAKERERKNGNQGTEFGTSGSQPNS
Ga0310127_006289_1801_2388	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADAHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKPSPKKAIETTKPALAEFIKEQRPNHPEPIVWDVSEIANQLGAEIIDEIPLCSGGDGPMVLKTGTKEGKEYRGWVCPTPKSGHPAKWMRIGSDGHWVFQK
Ga0310127_006289_2372_2926	F005585	N/A	VNGLKKLVLPYSTEGLSMETRGTIFYAFTKSREHSVFSSETHLNWQLLLLQQNSQEWWKVQSARIRISISLDTPLSWVDADFLHQKIGTTLSLTRNHNQNQYCDYCKYRWGANKNGWDLRAMTPAVWKVQSETPLRKAQVRFYCQPCADEVQNWPDGTFYSLKEQLEDAINDFAGREKLNVELP
Ga0310127_006289_2923_3087	F014613	N/A	MFSNLSDEAVVGIIIGVPFIGLYIWSLFTSAKAKAFNEGYKRGRSSVRYTEIVK
Ga0310127_006289_3077_3277	F014016	GGAG	MINKVALIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVNADVF
Ga0310127_006289_6263_7510	F004233	N/A	MTLWTPDWRIKVNGTELTSVTLSNLTITSGRQDINSPTPAGYCSLEVINTDGTNYSFTINTAVTVEIKNTTGNYVALFGGRISDLRQIVRSAGSSAIITSLRITAIGALSRLQRAIFDGNLAEGLDGAQILDLLDDLLLNNWNEVPPAETWATYNATETWADSQNIGLGDIDAGEYTMVSRQITDSVIAPIANSIANSALGYLYEDANGLIGYADASHRQDYLVANGYTDLDASHAIASGIGVIQRQGDLANKIIMDYGNNFNSSYTAQDTTSQATFGLFAEQFSSYLKNTADVEDVADRLIQLRAYPRNTFQSITFPLQSPEIDNSDRDALLNIFMGQPVKITNLPLNILGGEFTGFVEGWTFNASVSGLSITFLATPTEFSAVAQQWAQVNAAESWNSVLNTLEWQDAIGVIS