Scaffold Ga0310127_004887

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_004887
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11808
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031036	Metagenome / Metatranscriptome	183	N
F068607	Metagenome	124	N
F100734	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_004887_11267_11716	F068607	GAG	MNYLQYVYEAVNAASSVPVYSYAAPQGVAEDFIVFTLNGIDVTETKDEYKAERLNVTLFLHFSDSDLAQAELTEIRHHLQHYPRVIPLYRQEVLDDSGDIEGEDCAAATLGVAAEVTFTQAYMETAQIFYNEQDESLILSADFTFLINY
Ga0310127_004887_2848_3267	F100734	N/A	MKTATIQHATGDGTWESAYGLMYSYELHLSNGEHIKVNAKKPDAFHAGQSINYELTGKTDRNQTPLAKIVSDFNQNRGGGYTPQAPANNAGGKDRSILIQVAFKLAMEHLNAKDGYRVHELKDLAKLVYDQMKDAHEQF
Ga0310127_004887_6911_7057	F031036	N/A	MNTAQFLTIFTGGNYAAPIWDTYEAYVLADSGTVEARDCTINAIANLL