Scaffold Ga0310127_004266

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_004266
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13045
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015721	Metagenome	252	N
F030066	Metagenome	186	Y
F053266	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_004266_1705_2028	F030066	GAGG	MGDEFTYFPSKSVQTEKPKPSHNLEHQFHSNQAMWNSAIRESPLNRLKFYDAQLARGVDVNRDRVAELIREAGAAAVLSDRDTIGLVRQLWGEKAVEKLRARVKAGE
Ga0310127_004266_3038_3316	F053266	AGGAG	MPRKDTFHGFGTFYALGNKFEVRVEYTQDTDGGIILEAADLIGIFLDSDKAASSLNHDIKLDICDLGADDIFELEEIATRDALMNGPYGEDY
Ga0310127_004266_4523_4936	F015721	GAG	VVATYLLNLGHTVTLPKRRLARDFADRAEYADKGDIYASGKRIEVKHIKHDFGYEAWPFEKAAICAKKSFDAADPRPDYYYIVNASMTVAALVDVKTTFADWRVQKIVDRERGYDYDVYAVTPEYLGWRYIDFEERL