Scaffold Ga0310127_003795

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_003795
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14204
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006139	Metagenome / Metatranscriptome	380	Y
F014971	Metagenome	258	Y
F029047	Metagenome	189	Y
F054621	Metagenome	139	N
F068473	Metagenome	124	N
F084137	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_003795_10031_10195	F006139	N/A	MDTEIVVSIVGGCFAVLVALISKIGHDNKKDHGIVHTALGRIEQKIDAHVESHD
Ga0310127_003795_10377_10904	F068473	N/A	MIAKAKPGVPGARDYIGNSDGPANAKRPGTEMWVRQAAKYSNGALWNNGTFMRRDIKGKPGQMSVHSTGRAMDLSYRKMPNKGIERGRNTARQFFKKVVANANQLGVQMVIDYRPKPWGASWRCDRQAWKRYTTKTVSGAPGGDWYHVELAPGMADNAEAVKAAFKAVFEVSTTP
Ga0310127_003795_11599_11877	F029047	N/A	MDNSEINNYIDPDNTLSEGTRHMLDPTQNAITKHQMAVFDLIDEICRPAHVPYKPKHADLIARLKHLAVDLDLSGNTTAWQTVSEAIEALGG
Ga0310127_003795_4402_4593	F084137	AGGCGG	MYYIIKSARLGEVGTEYEPKPGINVKALLWGGFIAEVNDQQPDEVSTPAPKKGAKNKKATKES
Ga0310127_003795_5425_6009	F054621	AGG	MAQPVLQVKGIQETLALLNKIDPSYRRKITVRIKRSGEIILNEARSMVAHYDNSKGNGAPLSGMVRGNLVRGRETSWRTDQVQKGYKIKVGVRPSRERYVDFNRGGYTEQVVFGAKPYRLMVVQSTDPAGVIYDHAGRNVSSLFVANLTKEEGQQPRVIDKAVTKNRDAVQQDIQSVIADVEKRTNTQLKQRVK
Ga0310127_003795_9892_10026	F014971	AGGA	MTYEEAIAMYPHDEVHIQVDGVVRTMTPAEYEEFIQRQVNAIPE