Scaffold Ga0310127_003388

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_003388
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15367
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006300	Metagenome	376	Y
F011293	Metagenome	292	Y
F013406	Metagenome	271	N
F013882	Metagenome	267	Y
F014256	Metagenome	264	Y
F039115	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_003388_10292_10642	F014256	AGGTGG	MPDTLFKTGYDQLVAKLQTITGLTVFNDPRNINVPCCIVEAPTIFVETNVVADMQFRVIIVGMGIGDNRTLDQLLDLADLIREAKIGLTEARPTTVSYGGADYPAYELTINTKVSP
Ga0310127_003388_1668_2036	F011293	GGAGG	MSSSNIDPGDAAYRAWQLTKGDRMAQYGHPFDDYTRVRRIFGSITNFHHNLSTQEAIMFMVCVKLARLMKSLDEGKMHEDSLVDAIGYLNCLHMADARDQLLDAPLHVVGDMAIYRDEPTEA
Ga0310127_003388_2114_2656	F013406	GAG	MNPLSIIFAAACAVSGFGLMLVSDPETDTAGLVSESTVYTAPLRGTVGLDSPSDASGSDMRVVTTMPPYTGPGCREWADTALRAGFVLDDLWIALQVAELESGCLPGAIGDNGDSFGLMQIHTPSWCKPTKYWPRGYLQTQGIIDDCVELFDPLTNLWVAWHIATHHGWENWSTYGRVVG
Ga0310127_003388_5066_5227	F006300	N/A	MLEDWLKAFVAGSVAVLITSDYDLTNAVKAGLAAVLPMIYAWANTKDTRYGRK
Ga0310127_003388_8916_9410	F013882	AGAAGG	VTAESSITIVGLKETLRELQKLEPDTAKEIKKEFKNIVQPVVKEARIKVLAMPLSGFRYNWKAGRIFPWSQQAVSKSIMARFSNRRRGNSLAVFSITMKSPAGTVFDMAGRKSTNRLAAALDVLYGRGSRLMWPTYERNAAAVNANLAALVEKLTDAANRRLLN
Ga0310127_003388_9800_10234	F039115	AGGAG	MAVATTYLATPTFFIGASSGSTVDLTDQCKSVVVTKSRESLDQSSFGDTGRQFVGGLTNVTVTATLLMEYSSTPGTYVDLTALVGTRCYVAVKPTSGAISATNPEFQVTGAYLEALDVVNGSVGELSEIEITLVGGTLVEDTTP