Scaffold Ga0310127_003185

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_003185
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15937
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F004115	Metagenome / Metatranscriptome	452	Y
F004233	Metagenome	447	Y
F005878	Metagenome / Metatranscriptome	387	Y
F019642	Metagenome / Metatranscriptome	228	Y
F099166	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_003185_1048_1392	F005878	GGA	LGIPEVTLEMHPFKCGNCKKVTAHREIRRYASEINEGQEVWLMECQNCFEMRLIEPAERVASKEDEITRCDQCGNYKMKAAKCRICLIAAGQERIKERYWTGGATLERFLDADI
Ga0310127_003185_11543_12790	F004233	N/A	MTAWTPEWRIKANGNEVTSVTLANLTITSGRQDINSPTPAGYCSLQLINTDNTVYSFAVNTAITIEVKDSSGNYVPIFGGRISDIRQVVTSSGGVATVTNLNITAVGALIRLQRATFDGNLAEGLDGAQILDLLDDLLLNNWNELPPAETWATYHATETWADASNIGLGDIDAGEYTMNSRQITDQVISVVANQIASSALGYLYEDANGLIGYADASHRQDYLVANGYVDLDAGQALGAGVGIVQRQGDLANKIVIDYGNNFNSQYIAQDTDSQATYGLYAEQFSSYVKDTADIEDMGDRLIQLRAYPRYQFQSITFPIQNPELDDTDRDALLNIFMGMPVRITNLPPQMLGGEFTGYVEGWTFRASVGGLSLTFNASPTEFSAVAQRWNQVNAAESWNSVLNTLEWQDAIGVIS
Ga0310127_003185_14310_14501	F019642	N/A	MEISEFAATLASVLGSIGLLIAGLRYIIKLENLPLISRLDKLESTLELALKEKVAKGGTKARR
Ga0310127_003185_148_495	F004115	N/A	LDTPLSWADADFQHQKIGTTLSLTRNSNNHQWCDYCKSRWGQLKDGTWHLKAQVPAVWKVVSETPMRRGQVRFYCQPCAADAQNWPDGTFWSLKEQLTYAIDQFAGREKLDVELP
Ga0310127_003185_2404_2889	F099166	GGA	MTIKDLSLKLAAISLLADQAKKLKDELRAELKVQMDELGADRVKAELGDEVVAYITTTKPKFKWAIKSDRKALEWFKAYYPSEVIETIRPSSLEAILDKFNYQDDVVIDPNGEVVDWLEGSLAEPYLTTKFHGEGRAILRDALIGLKRNELDVKEILELEG
Ga0310127_003185_479_1066	F000645	GGAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHVLEESLTPNCDVYIVKTELYRTEADAAAWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKPSTTPKKPIQTTKPELAEFVKAQRPNDPEPIVWDVSDVAEKLGAEIVDEIPLCSGGDGPMVLKSGVKEGKEYRGWVCPTPKSGHPAKWMRIGSDGSWVFQK