Scaffold Ga0310127_002599

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_002599
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18385
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (82.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033428	Metagenome	177	Y
F051124	Metagenome	144	Y
F061844	Metagenome	131	Y
F085645	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_002599_15610_15780	F061844	N/A	VAKYLVSGPFPVTGVQPGGHVDGSGIDNVELLLQAGVLTLVEESKKTSKADKAGDK
Ga0310127_002599_2552_2962	F033428	AGAAGG	VSRLEGQLVADEHVSILKMRFARLDDKTRLIIREIADEAHGDISMTPPTERRVGIARILLEVAENDATIDKDLVRSICELRTGKKYNNAGLALSDLSWIDAERVWSTFQDIYADRVELEYIPVSNHYIIKEHKHVR
Ga0310127_002599_264_506	F051124	N/A	MTKKTDPLEQYVNSLGAGWCIRYVMVAIVEDTSGEQNFIIQCSPDQTAAETIGLCEAVSHIQKAKIAHAWIRQETETDEE
Ga0310127_002599_920_1267	F085645	AGGA	MNHDYAKPDMAGADILTEAHHLITGPRQAEYSHPFDDYYKVKELFFTMTGTMLTVEQAILFMVCVKLARLSTNMEHGRWKRDTIVDAAGYLGCMSMAHEHRQEKLRELADIEDEQ