Scaffold Ga0310127_002561

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_002561
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18564
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (20.51%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001981	Metagenome / Metatranscriptome	608	N
F003660	Metagenome / Metatranscriptome	474	Y
F005845	Metagenome / Metatranscriptome	388	Y
F008996	Metagenome	324	N
F014844	Metagenome / Metatranscriptome	259	Y
F035673	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_002561_12750_13199	F001981	N/A	MIHPTLITIPKADICKAEIAQIAQQLTDRIKDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFRAFGAEITLKEGTLTPNYEEDEVYADLKSQMKAREELLKIAFRQAGKTAIFDESTGEQIPVCTAKATKASIAVSFK
Ga0310127_002561_136_870	F008996	N/A	MKLLANIAYHHNPERMPNLIRVIEAIKSYPVQADIFVDTNDPEVVGLLTDQPVTVHAHTQLSHPWMLTAVHRNRIKETYKYFDWVAYFEDDMMLPKEGFVNFIERFDSMFADGLYPSFTRIETYEDKEGECTPDVNEVLPSSVWCQYNGKDYVSLPFFINYHAFWMFSTKRLKEVLTRNPEELDKIPNNGLFRESLASFPIWSLGLKPMLEFTEQGELAEHCKVFHLTNNYKHGSTNIKTLFKR
Ga0310127_002561_13997_14116	F003660	N/A	MNHETQAKLKAALVTGYILLATMLGIAFFGRFLFALITN
Ga0310127_002561_17885_18064	F014844	N/A	MLIGYGYGYPTNQLLGGVSDPALTAWAAFNTRATADGATAAEAAVNACLFTRFAAIFNF
Ga0310127_002561_4027_4470	F035673	N/A	MVLCAALRQAEAVFLHDLLWVLDGCPPDPADLPMVLGSNPRPRIFSHRNNHSGMDLQMTTDQFLVAQKHRKYWDQYIASLTMRLPPDAVAELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFAEFNQNTVTIPLTNAPTDTER
Ga0310127_002561_5573_5725	F005845	N/A	MKTTPTDFRRWQIHIRKECVNCTKPDHSETIRRWRVNYTLLGRILQAKNA