Scaffold Ga0310127_002177

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_002177
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20551
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (7.32%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001640	Metagenome / Metatranscriptome	659	Y
F004839	Metagenome / Metatranscriptome	421	N
F010541	Metagenome / Metatranscriptome	302	Y
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F025505	Metagenome / Metatranscriptome	201	N
F031483	Metagenome	182	N
F041648	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_002177_10009_10269	F014956	N/A	MINIQDFALNVSITVCPSHIVEPDHLKKWWRQRGVGELEKYFVSGKSIHYNEEINWNEISNHKKSLWYDSQNFQINMGHEYSKRQG
Ga0310127_002177_10244_10702	F031483	N/A	MNILKGRVKYTAGKIFEGQYGPSINAAITLDNGTDVRVYGKPDDNKLMALKKDDVVTIIHDGKSYKVAFDMVTANEIPEKVQTPTEGTNVQQAANVPPKNNGKLTHDEITEKATLMTSVYADIFHQLQASGLEPAQAQPAAATIFIQIGKYF
Ga0310127_002177_13440_13700	F010541	N/A	METKIFAVMYFGNAKRYQDLNYEIEAFTKREAVEKFYEKMRNEDYFPEDAFGGGIIRDCDGNIIADHTDETIEYDGGCFYAEPVIQ
Ga0310127_002177_14847_15374	F004839	N/A	MEKNFNNLQFKWTFESISDNIPTIMLLTIVLTYGINAYLTAIFLPIDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATLVALLEIFFGLQEKYEGGEFITMFLFIGTIVVFGYLLEINFVDKGVEAYGLIETKPKRKRKPRVKAEAKPVSKAKNFVSSFKTITL
Ga0310127_002177_17635_18237	F001640	N/A	MKNILFFLLIPFLALSQDVVTDTVYIQKQGDIYYIVTMTTFSDSTVTGNKQILGDSLTAIKALVTDAERQSNTIAIHAKPLILKGKSVKRINYYNNLHLQISGRPVYTSTALRDTSSFFGDWTLVFEGENIPGVIKLNANDRYIFNPDNGKVYTITTNLLLSTFTNQISFAFNGVRYDLYKFANGKFATVDNDVRLIKKE
Ga0310127_002177_8262_8996	F025505	N/A	MNNLPMIANRVEEKIQDVQLVIQNRELRIFKTGTKEAIPKIAQALSQLLPVYGIEPKPEHLMEVTEFISNYKLLAVDEIKLAFEKFAKQELDINDHKLYGKVDLHAIGRIITAYITWRQKIYFAMDSDLQAKKEEEERIKRLGKVAEEYDKDFDNKLKNFQKPLEEIPVFWYDECVKRGYINEWGEGEKEALWAEAQKMAKQEKPDSDNMIDRKNHMRKIEEGNMPRARALAYKLAVWRKVLLR
Ga0310127_002177_9343_9651	F021732	AGG	MALIPPFFHPQKLTKMNITKYTCKCTLDKKLGHFVHVIFSHGFGLYGQTSPHSPEDNIQIHGWTFEPHDIDLELYPPITSRNLMPLVAEHEMDWVILTNQSL
Ga0310127_002177_9662_10012	F041648	N/A	MEALKTTLTDNALTRYYEERIVYLEGENERLRNEARADFWIVLDFWIYSQRMIQAYVSWHNEAKHNHYLDCIKTMLETLEAHETRVLDTGINKLRIGVIEECKEAITKCQQITAAR