Scaffold Ga0310127

Basic Information
Taxon OID	3300034072 Open in IMG/M
Scaffold ID	Ga0310127_001608 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034072 Open in IMG/M

Scaffold ID

Ga0310127_001608 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25151
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (83.64%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

25151

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (83.64%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001531	Metagenome / Metatranscriptome	676	Y
F003658	Metagenome	474	Y
F010680	Metagenome / Metatranscriptome	300	Y
F025943	Metagenome / Metatranscriptome	199	Y
F099159	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_001608_17867_18349	F010680	GGA	VIVNLTKDEVRVCTLLAVERWLTKFGSVDRPNYAEGKKAGRLEPEINANIRANVAEWAVARAYNLQWSVPWYPNELHPQRKDIPDVGSNLEIRTVRTQNSIPFWKKDSGKTIIGVKVLDEEYYSQVQIYGSFVADNYMTDEYYREDISGWRFPVEQMGQQ
Ga0310127_001608_18741_19418	F001531	GGA	MNWERIEPWQYIVDAVALEYSRKFEMVEVDDLRQILYQWFAEHPRKLDEWEAKGDKDAKNLIYRSLRNQALDYCQRWKAKSVGYDISDLYYYAPEVVEALLSPVLRGEFNSTHKLNLGRTGRPTAPAEGGNLMAMMIEVDYVYWKLGKEDRKILFMRHAESLDFREIANLLSLGSEDAARMRHKRAVNRLIRKIGGFKPFPDYDLPEKEEEESEVVSEVNPTPED
Ga0310127_001608_19593_19760	F003658	N/A	MLDLRGDPILVCICGSKMWNITVMWDEETRDVGWYDLRQECKECGAIATAPTEID
Ga0310127_001608_1996_2175	F099159	AGAAG	MNTGKPRKAGGIDNPNAKSHVADLYRNTRSIKYKPNTKLGGRQMDPTKVKGFKYGEGTE
Ga0310127_001608_8770_8967	F025943	AGGAG	MERKFAVIEDNKVTNIVVGVEDEVVAANPGKYIEYTNGWDYNNGIDGGSFFPLLPPVIEEPETIE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310127_001608

Overview

Ecosystem & Geography

Associated Families

Sequences