 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034072 Open in IMG/M |
| Scaffold ID | Ga0310127_001455 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26904 |
| Total Scaffold Genes | 48 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (70.83%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028157 | Metagenome | 192 | Y |
| F033428 | Metagenome | 177 | Y |
| F051124 | Metagenome | 144 | Y |
| F061844 | Metagenome | 131 | Y |
| F085645 | Metagenome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310127_001455_14232_14642 | F033428 | AGAAGG | VSALEGHLVPDADVAELKQRFKAIGDTLRAEIRDISDEAFGAISMNPPTERRVGIARILLEVAEQEGHIDKDLVRSICTLRTGKHYPSAGFALADLSWIDAERVWSTFQDIYAERVEMEYIPESNHYTIKEHHHVR |
| Ga0310127_001455_15565_15891 | F085645 | GGAG | MTDGADILTEAHHLITGPRQAEYSHPFDDYYKVKELFYQMTGIMLTVKQAVTFMVCVKMARLSTNLENDVWKRDTVVDAAGYLGCLSMVHEHSDARMRQLRRIDADLE |
| Ga0310127_001455_15888_16112 | F028157 | N/A | MSMLEPKFITVMADHDAHARWVAPIDATDVVNAYRTGGIYLLVTLDQEGNLQVAFKPGRHWEASWSPPISLDRK |
| Ga0310127_001455_16305_16547 | F051124 | N/A | MTKKTDPLELYINSVGAGWCIRYLMIAIVEDEQGEQQFLVQASPNQTAAETIGLCEAVSHIQKAKIAQAWIREEDETDDE |
| Ga0310127_001455_543_713 | F061844 | N/A | MAKYLVSGPFPVTGVQPGGFVDGSGIDNVELLIEAGVLTPVQEQPKPSKADKAGDK |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |