Scaffold Ga0310127

Basic Information
Taxon OID	3300034072 Open in IMG/M
Scaffold ID	Ga0310127_001144 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034072 Open in IMG/M

Scaffold ID

Ga0310127_001144 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31546
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (26.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

31546

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (26.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009717	Metagenome / Metatranscriptome	314	Y
F045073	Metagenome / Metatranscriptome	153	N
F051094	Metagenome	144	Y
F051899	Metagenome / Metatranscriptome	143	N
F065237	Metagenome / Metatranscriptome	128	Y
F095413	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_001144_10625_10801	F065237	AGTAG	LAGGRRAEWDAILEMKLIEFLNTLSFHRTITKARNQRLDQAAAKGFESYVCACLNELI
Ga0310127_001144_20949_21155	F095413	N/A	MIPAILIIPVTFVILALSYLKFIIKKGIDSYDVPHQPVPERDKFIPQFNEWQKHLKTERKKLYKGKAL
Ga0310127_001144_26424_26747	F051899	N/A	MTRSFYILVIALLMFAPQNAYCQFTDSLIREVNYRLWQGAKAREQVIQLKKELAIDSALIHEQGVVIKKLDKENIQLRTDNAILTQTNKTFKRTSAALSLLVVLLIL
Ga0310127_001144_29820_30164	F051094	AGGAG	MKYIILTALLAVTATPRLDNTDPYKKYDLVIDHAQQTIEVTRASIDEAKAMTEDKVQQVQETVLKAEEMAKKVELLERVCDVYEVPVPASLEDFEQLRIEDSLRVSNMQQINKR
Ga0310127_001144_30161_30421	F045073	N/A	MKLPVSFSEFSKDPSKAVTYLMLFAVVFLYMRMENQDKQVNTGCEDRLTRCETKLDQMAKMLKTQDSLSASLRSELNTYKKIGVIK
Ga0310127_001144_30550_30891	F009717	N/A	MYIKINTTVNLSSGLSIPAGSVVTIAEGYADIKSVKDGIIPAQVATFVYASEAAYQQGLEPVSGVADFNPVFGGLELSVSDYQTKTAEALLVTAVEGALVAIYGAENISIVNG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310127_001144

Overview

Ecosystem & Geography

Associated Families

Sequences