Scaffold Ga0310127

Basic Information
Taxon OID	3300034072 Open in IMG/M
Scaffold ID	Ga0310127_001009 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034072 Open in IMG/M

Scaffold ID

Ga0310127_001009 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34710
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (57.89%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

34710

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (57.89%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010762	Metagenome	299	Y
F015082	Metagenome / Metatranscriptome	257	Y
F025689	Metagenome	200	Y
F030056	Metagenome / Metatranscriptome	186	Y
F032652	Metagenome	179	N
F033776	Metagenome	176	Y
F076034	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_001009_17897_18097	F076034	N/A	MDRINISVKQQPVINRLHDCMTQALAYAAAIRDNAQDDQQPIPAELVSSFEADYHRLISILTEAAS
Ga0310127_001009_23694_24236	F032652	GGAG	MQIVLDTWTFEECRLCALQRDSNRLNSTDYSSDKTDDKSIWSFCGVVGEVALLTYFNLKPDWKYLSTDEGFCGVDVGELWEARSMMKGSNRLFLWSDEIRKDSKLSCAWSKIIVNLESRSCEIAGWAMGYEIADSGVHAKYDCKRSSYFLSNSNLRNHVDPTIDNDTAIYLHHDFLNKAA
Ga0310127_001009_26829_27029	F015082	N/A	MTDHDIYWTLATACQYGGSFYQALAYAGLKADPSNKRRILDAFPEMVATYGTASRLHQGLRSGAVA
Ga0310127_001009_29305_29457	F010762	GGAG	MDEATLKAAFEEWWRDSYGVPPGTHAVMTHTAFAAYILQLMELMQDDRSS
Ga0310127_001009_29632_29874	F033776	N/A	MADRLAKGKGRNFTVNIRMSREEIEAARKLGDGNISMGFRQAIRYACWKEMKPITLSTMLRSAAVMAQTLENATRSSSMP
Ga0310127_001009_30660_30926	F025689	GAG	MLSDMMNPFVHTMEAQFHGAANANMLRQLHAAKDYNALLEYGLLLAEQEASQRSQIKWLAAEAMRSCSVEPWHLDAAKDLLADLTGRD
Ga0310127_001009_32185_32382	F030056	GGTGG	MQTDGMRQYVLEVEYTIVVESDNEDPQEVSDDFVARLTELAPSNDHILGLAVQVLPIPELRGSSD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310127_001009

Overview

Ecosystem & Geography

Associated Families

Sequences