Scaffold Ga0310127_000977

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_000977
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35343
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (74.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051082	Metagenome	144	Y
F063491	Metagenome	129	Y
F069436	Metagenome	124	Y
F075836	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_000977_24143_24388	F063491	GGAGG	MAATDNPYPCPAPLVLADMLAIHCWSDHVDDHSRKLLEWAADTIRHVVRKNAQLSHDRDNAEADAAHLFLLHYGQQKGGAA
Ga0310127_000977_24385_24558	F051082	AGGCGG	MNVSELTCIVIGMIFNVLTFALGCAVGVSLALRKDSHNDRNRYQDEGVQYYDPPGKG
Ga0310127_000977_31175_31429	F075836	GGAG	VRFLIVSLVVLAGCVATLPDDASISADLACEAARALVLERARPDTPDDKPKPGDKCPNCEGRGYVGDGRVQVKCQPCDGTGKVK
Ga0310127_000977_31764_32042	F069436	AGGAGG	VTAETKETVFGILERWGFPTLVALALAFFIRQDLLLPLLEEHRLTLKEVRETQREIADAIGDQTRLLLSIQSGKPVHGLRTVDATEPEPGNN