Scaffold Ga0310127_000899

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_000899
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37166
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (66.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023002	Metagenome / Metatranscriptome	212	Y
F029733	Metagenome / Metatranscriptome	187	Y
F073496	Metagenome	120	N
F078745	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_000899_10899_11159	F078745	AGTAGG	MKDKAYEEITKGGEAEKILGSKVYQEAFTKVKSNIIEAMQTSPLGDEITHNRLVIALQTLNQIERALTDIMQTGKMAKIQVNDNVK
Ga0310127_000899_1990_2148	F073496	N/A	MQMDSPQYVGHFTSCAAANEYVKEHYKDAPYTTCLFEDYINLPKDLVKKEIK
Ga0310127_000899_29886_30224	F023002	N/A	MKLDIRTLEAIYDMLISTHVLRDVGLPPSYEIDFELLSVSDNCMASYTPDPDTIGVCPERHRFLTSVIKSMLHEIIHMTNHYYGKSYIRHDKSFQELRKHIANELGFDENEI
Ga0310127_000899_32804_33025	F029733	N/A	MTRKNGGVEETCQHMEYVKMITRRMAIDGEWFTIQFFKEGDGSIRVEMVHDIKNKFYRMYPDNKIIFEESKDG