Scaffold Ga0310127_000851

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_000851
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38631
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (68.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029733	Metagenome / Metatranscriptome	187	Y
F030419	Metagenome / Metatranscriptome	185	Y
F073496	Metagenome	120	N
F078745	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_000851_15891_16202	F030419	AGGAG	MAKKALVSKIEPRGKNNSGYRVLEVVDAANTFEVHSNLQWNDCADTVEMDKYWYDPASSSFKKLPEAVDQYTAGQLAVDEENNLIEAYEWDWDNEVWIKVQIL
Ga0310127_000851_30829_30987	F073496	N/A	MQMDSPQYIGHFTSCAAANEYVKEHYKDAPYTTCLFEDYINLPKDLIKKEIK
Ga0310127_000851_31795_32016	F029733	N/A	MTIKNGGVEEHCQHMGYVRMITRRMAIDGEWFTVQFFKEGDGSIRVEMVHDIKNKFYRMYPDNKITFKESKDG
Ga0310127_000851_6746_7018	F078745	AGCAGG	MADKTLNEIKRGEQAEKILENEVYKEAFNTVKANIINAMNVSALSDERTHNRLVIALQTLNQIEKSLADVMQTGKMAKLQVEDRRFKVFG