Scaffold Ga0310127_000680

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_000680
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45692
• Total Scaffold Genes: 103
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 79 (76.70%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F001176	Metagenome / Metatranscriptome	756	Y
F002060	Metagenome / Metatranscriptome	597	Y
F002071	Metagenome / Metatranscriptome	596	Y
F003643	Metagenome / Metatranscriptome	475	N
F004666	Metagenome / Metatranscriptome	428	Y
F018349	Metagenome / Metatranscriptome	235	Y
F040535	Metagenome / Metatranscriptome	161	Y
F042904	Metagenome / Metatranscriptome	157	Y
F046368	Metagenome / Metatranscriptome	151	Y
F047645	Metagenome / Metatranscriptome	149	Y
F068492	Metagenome / Metatranscriptome	124	Y
F074876	Metagenome / Metatranscriptome	119	Y
F103128	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_000680_10570_10758	F047645	GAG	MGMCRHVYEYVYAEICPDCGQMTCEPNYEVESRLFKEYYASDAPNAYKCPVEGGTIRGWWSI
Ga0310127_000680_13318_13464	F004666	AGGA	MTTKREYLVSKGITVGRRGRFSAAAKQALSEAEKNGVKFSAETKQAKN
Ga0310127_000680_14143_14421	F068492	GGAGG	MYSTELPERLQRLVDLGETGTDILHGELKSLMLGAEQELEAASLIEIENDYDDALQSMERKYWEGQADALAHVYALTYQLSFAINERTKTRG
Ga0310127_000680_16636_16791	F018349	AGGAGG	MDYRDGFEDGVKFTREVIINNIRKWAETHEDGHTLDWVADQIEFGTLDNDL
Ga0310127_000680_21342_21488	F002071	AGGA	MLEVGQTFTTTQSGITGIIKAVDNHPSGVNRILLDVNGKERWTSAPAK
Ga0310127_000680_24713_24871	F040535	AGGA	MLSLSYTAEKEGNFVSVNDRLMLNEWSINYLMETLVANGYTIEEMSVADATL
Ga0310127_000680_26784_27062	F103128	AGGA	MNKIYIDQITRYMNAARLEFQNFYDDVAMANGALRWTVEYLEKQLGNCHGVKDNKCYFYWKHEDCNRLMALLFDLTGDDKYLENRMKGSSWE
Ga0310127_000680_3053_3373	F000473	AGGAG	VSSKHYYDDKHFKYGINQWTGEPNKPVFYTEEMKKKVREIKKPMLLLMDVAMYPDFLTLRLYEDNFLQFEGKKKEEVIDYVTKVKKLIESYGVRCELEGVPSGRVL
Ga0310127_000680_31285_31515	F003643	AGGAGG	MNQDLNNDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTDPGDLIKGGIAACLPVILKALNPNESSFGFTKPQA
Ga0310127_000680_3357_3557	F074876	GGAGG	VEEYYDIINVVFIHEEGIYGTVDKLGAFASIVKYQKDGIDYEVLLENDEFAIVDEIVFHHVEEDNG
Ga0310127_000680_34145_34618	F046368	AGTAG	VARKFLTPVTPPSLASDPASGVAGAIYYNTTSNVLKFYNGTEWTAVGSGGGGGEFSGTATGIQALDTAPNSPSQGSIYFDTAENTIKTYNGTIWYDVAGPKELLDHQHYAGEGLVRHVDYGQYVSQLNYIVSMDGGTASTSYASAPDNDIIDGGSAL
Ga0310127_000680_3815_4126	F002060	AGG	MDYTSIVIALLAAVFSGMGTAVVAGLRDAKKEKRRQVEREQDHLKLEIKDLKIALYQLEKELTDWKDKYYSSIQELIQVKAELENALVQLNLAEIQEHIDSEY
Ga0310127_000680_6221_6430	F042904	GAGG	VDRQITVLEEIIEDVATDLYKKWSMALPEEEKNEEVFKTLAENSKEVTIFVIKNFMDRFNSAAEDLKNK
Ga0310127_000680_9871_10083	F001176	AGG	MSDNGTGMATPPNNEPSGAVTSQEVGRKKPSQGKFRSGVSDQRTMRVDRNRHGIRRETSVGPKKTRPKKV