Scaffold Ga0335028_0186515

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0186515
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1294
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F006842	Metagenome	363	Y
F036551	Metagenome	169	Y
F065721	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0186515_166_306	F006842	GGAG	MSYTPAICGDHLVPISECDCVNYLQELKTSAERLVQLAKEREELNK
Ga0335028_0186515_2_169	F036551	AGGAG	MNEALETLLSNEIRVCELCGSNEWRILHAGDESNCECEGECLRVCDSTLLSDDGCD
Ga0335028_0186515_303_563	F006618	GAG	MKQHLESEIVIKGSSHEDTAWKRYIRFEYEGNSYELTLFWDEFNGYEIYWQVPNKTPDWVVNWNQDEYGGMSFQWYLDDLTWEMNK
Ga0335028_0186515_930_1133	F065721	AGG	MTKYVANENGDWWEVVEGDGLYLIDTNNPDIAEAMKEEDASPDNDKFEKFIWQYGTTVYIDMEGVRV