Scaffold Ga0335028_0157031

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0157031
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1443
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F038242	Metagenome	166	N
F062757	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0157031_1160_1441	F062757	N/A	WIITAVGGNPNEPHYLLDIHCNGPIGNRIDGCTISLNRIGELQRHMFKPDTTAYFLYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKQ
Ga0335028_0157031_384_728	F007690	AGG	VDDIDKLNNMLTIKNILKLQNQPIWDGWEVNDIYKGDHNDTYIFELVKRKPLPMHNGLCTIMLERTGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL
Ga0335028_0157031_44_382	F038242	N/A	MLTIKNIKELELNFCHNRGLKRITETQNKLGENFYCFNFGPISDGEGYNKETEVRLGRDLNQGEYQIFVMGLQMATRRFITIDDVKTKGGLASEISKVLAKAEHWWKTEATL