Scaffold Ga0335028_0134621

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0134621
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1587
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000813	Metagenome / Metatranscriptome	880	Y
F005878	Metagenome / Metatranscriptome	387	Y
F099166	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0134621_1207_1587	F000813	N/A	KQYALELAETGSISRALNLAGYLAKPNPAPKKPIQTTKPELAEFVKEQRPNDPEPIVWDVSSIAEQFGAEVIDEVPLCANGCGPMILKQGTKEGKEYRGWVCPIAKSGHPARWMKIGADGHWVFQR
Ga0335028_0134621_881_1252	F005878	N/A	MDENWSRWALGLSEMIDEIHPFTCGQCKKVTAQRGIIKYDSEITEGQDVWLMECQNCFEQRLVEPMDRVANKEDAITRCDQCGNYKMKAAKCRICKIADGQERIKERYWNGNATLERFIDADI
Ga0335028_0134621_91_579	F099166	GGAG	MTIKDLSLKLAAISLLADQAKRLKDELRAELQGEMNELGADRVKAELGDEVIAYITTTKPKFKWVIKSDRKFIDWVKTNLPSEIVETVRDSSIDKILEKFNYLDDVVIDPNGEIVDWLEGSESEPYLTTKFHGEGRAKLRDAIIGLNGANEIDVRKVLELEG