NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0130907

Scaffold Ga0335028_0130907


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0130907 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1614
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F009005Metagenome / Metatranscriptome324Y
F023789Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0130907_1382_1612F023789N/ARTPNRYFINHYVMDTNHTHGLTGRERVELQSKIQRLQWLLSECIGLEEYELCSQIRNVIQKKYELLSLNQSENITE
Ga0335028_0130907_597_956F000785GGAMRVSNKKLGMRFDCNRLWNWAHEKLGESRCGAIAFYWDTKPDSECGYYDWEKTIWINLAQCKRMIAVQKTILHEWTHAQQSYRWYNWYQLKYGYKNNPYEIQARENEKLVKRAYKRKTK
Ga0335028_0130907_80_226F009005GGAGMLERARLIGMDEELVSYAKQIQRQLSTDGDSADWFDCLEMAYNELIIN
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