Scaffold Ga0335028_0088475

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0088475
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2044
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F008296	Metagenome	335	Y
F029029	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0088475_1749_1937	F000368	AGGAG	MNPTFKQAALSWFRAAAAAAVALYVSGITDPKQLGAAALAGFAGPVLKWLDSSAPEFGRGSE
Ga0335028_0088475_22_636	F008296	N/A	MEYSKKYSIVEPSDIKQILWMWFVTHPKKYKEWSELPAKDKEKLIAKSLRNAALAYCEKEKARKFGYDMVDLYYYDSSVIEAFLPSILADSYEIPTKIKDLNFQFGKSGEVTDGNNWLVLRSDIEKAFNRLPEAKQNILRLRFTTENCEWNELGKQLDTSADGARKRVERAVNSLIRILGGWRTFNDTDNLVDKNEEEDDDIRT
Ga0335028_0088475_620_859	F029029	AGAAG	MTSEPKDISSLFQKDYTNAMDLRGNPIGDICICGSELFTAIVAFEAGEICFYFLDGECVNCGSLVTLSTPIDDIGMDCM