Scaffold Ga0335028_0071981

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0071981
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2305
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006181	Metagenome / Metatranscriptome	379	Y
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0071981_1534_1830	F015582	N/A	MTDIDPELQAEQLEDAKYLEELNHYVNTLSAPSAESVALYRAKLSMLEDIHTEIRAKYPDFKPVYDSSMDAALNQDLGKYQEMTYSFSSRDLSGNRSE
Ga0335028_0071981_3_260	F006181	N/A	MTTDMSTADILERVFAEWNHGSGRECEMFVNSKKRSLCVNDIVCVNGTYFQCASFGWHEVTPAYVNELEEAVAAHPSRVEGAWFAL
Ga0335028_0071981_912_1484	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIKKENNVAIYQRFNTDGTPRSYEVFIVKVVPKGAPLPNGKTVEESYEQYPGANAFGKTAYDCRTIAQAEERFDQLVIKAKDSAEAKEEAAKTGVRNRGRRGSSKKIKLDMTLNKGTKFTAKFLMSALGVTQPVLFPIIKEWEKQGVIKVNGTVKGEGKGRPATEYIVV