Scaffold Ga0335028_0047864

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0047864
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2908
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039506	Metagenome / Metatranscriptome	163	N
F093750	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0047864_2351_2623	F093750	N/A	MKFKVSYYDFDTDKYVTKECYRMGFYDGIFEFMPVDDPIKIYKSIIIDHPIFSVSQNNTGFISISVVGYQYMKNGFYEKTTTKIENVRED
Ga0335028_0047864_892_1260	F039506	N/A	MTKYVKLIAKPDTWFKAGTEVFDYDEYGKRITLESYNKWLKSGSILVRGIRVCEHDYELKLGYKLGEERIDGELCGIDEFDMTIVDDEKDIPWPKPLDPPTTTAEAEARQRRFEDNIRYIQG