Scaffold Ga0335028_0017588

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0017588
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4996
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011761	Metagenome / Metatranscriptome	287	Y
F026558	Metagenome	197	Y
F057213	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0017588_1069_2139	F011761	AGGAG	MAYVLGGGNNEADGFTTAIANFALRAMHESTGLVEFTQVVAPNQGNQYLVPNFAPITYQDYNPAGSSGGDGFGSPPLAVEQNPALGQGSITATPAVAATAFDVFYAWTTSFELAATLGAELGESYGEKVDIRVCQAFLSFKATPGNTNYSPTPADGFARPTELGAMELITAGLPSNTAGWTNGFTSASVLELVRNVKQNYKVARLPGTPIIVLDSNGDAPTPTTTATAGQDGSSLNRMLAELTGGAVSQSGGSNLSALGNELLSTGRIESVYGCAVIFTTFLPSTTRVLLGQQSASPVLVGGYFHETAIFTVLKEGLQIKMGEKPGGLQMWLTGLAYMGAGVADPRRGGAINILQQ
Ga0335028_0017588_2162_2944	F057213	AGGA	MLENQLDGSVSAPDAEQVTNDAGDGKVNPGVIRKSTTNSILNALSQASGQNFESVEAALAYVARTSSQQRGGNAQPVESELTDNSRMGRDVSDDSTDLRDQFMRLQRDLAQKDRALRMKELDTEILRNMGDRFDPDLQDYALQKIKSNLQFKRDGSYSIINQKGQERYGMDGNPLSLKGLVEEVAQGNPKLLKQNSLSSGSGLRPGQSQFAGAPPDTIPDYSKDPAAFNAWASKMGLGKRVGLKGASVTATVSTASRKIV
Ga0335028_0017588_2989_4599	F026558	GGA	MNVHELTHKNPIYNAVYEQMLAYQYAYLGGQIFKTYVRKKRPSEDSNLYIDLVNNTVAQPICRYIVDTINDVLFEPGIKRELKFCTPTGQYINPDNTEWAQLMLLDADLQNRSMDSFMEQVGDLTSIYGYCWVFVDMPKQDEGNLGRPYVVAVNPLNVWNWEWEWFGGKPMVKHVKVLEAEDKDNYYLKCYHLGTDEYPSYWKNYRVGKNVSKNDVEEIGTGTYPAGMSIPGFIAYGRRDPRTMDLGVSDIDSASDAQREHYKLECEAYTSVQFAKTIIRADKGVAIPVHAGAIVRASQGQVETIPVDTGDVDKVTSRQREILEQIEALTGLGGLRNTKNQIASGVAIIEERKTLHRLAKSKARLMEVTEELIFTYAARFMGMRWAGEVHYNTDYEAHDTNYRLALMGQAKAMVQNNPIIDSLITKEIIGMLAPAEKIPQYEQAYIETIQDQQVKDLMTQDNEQILSRDLGDQISTPEQFGETEPMYGDDTEYDSAGDYGVGYNDEGIGTPVTYTGQSYYTSQAIATQLQGINTGR