Scaffold Ga0335028_0008465

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0008465
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7241
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029046	Metagenome	189	Y
F046686	Metagenome	151	Y
F066470	Metagenome	126	Y
F093237	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0008465_1204_1503	F066470	GGAGG	MTEIARRIESAKRSAVVYRNYRRARERAMTRLSNAYPETYKELLEQEKIVDEQMGKKWLDIDGSTGQSMDLDSSSSPTGGGEGEQASSNTDQSNDGGKA
Ga0335028_0008465_2706_2867	F029046	GGAGG	MQLQEIDTLQDLRLWVEENMSGATLAEDTAGNLVIHLNLYSTMGGYLHEREGE
Ga0335028_0008465_3113_3292	F093237	GAGG	MPYKYDLGNTRDMSSQELLDALLAREIAPRTIVGTGYKNGRQVAIDYLKERIAEESEGK
Ga0335028_0008465_917_1120	F046686	GGA	VRAGLTTSQITQDHQLTELLNSLEREVENLNFKSFTVYDTLVIAIEAMRVALSDTQTEEGGTDADRS