Scaffold Ga0335028_0008449

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0008449
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7245
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003134	Metagenome / Metatranscriptome	505	Y
F005697	Metagenome / Metatranscriptome	392	Y
F021065	Metagenome / Metatranscriptome	220	Y
F025683	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0008449_1_453	F021065	GGTGG	MTLTRHEEFTCHEAALALAKENKDYWEWKEGSYTPEKSFHDQIAQDAHSIGSEWVVAKYLGYEFNPFEQKGKVKADVGSHFEVRWTKYVAGQLIIHEYDRPNDVAILVTGESPHFFIAGWIPIVMAQKPRYRHSKQPNWWVTQINLQPIEN
Ga0335028_0008449_1380_1553	F025683	GGAG	MVVDLLDPQTLQRLVLLVILMVISAAAGYAKGFKEGKREGMARRKAMVRHMANRAVK
Ga0335028_0008449_3857_5104	F003134	N/A	MTQWSPVWKVTIDGTEYTSAVLANLTIRSGRTNIYEQAQAGYTNIQLIDVNQTAIPVNVNSTISIQVKNTSNTFIPIFGGNVVDIGLEVRDVGSTMFTQTYSITALGALARLPKALTQGVLSKDFDGNQIETILSQVLFGSWAEVAGSLTWAGYNPATTWANAENNGLGEIDTPGNYELAARSSATTDVYSLVSALATSGLGYIYEDANGAIGYADSTHRTTYLSTNGYVDLDANQARAAGLRIETRAGDVRNYLTIKYDATSSSEKTAFDDTSIGQYGTLAQIITTTLHNAADAESQAQFYLSLRKQPQPIFSEITFDLTNPELDNSDRDNLIGIFMGEAISLQNLPLNMNSGTFQGFVEGWSFQAAYNRLTVTLLLSPLAYSLQAMQWNDVPITETWSSVSPTLDWENATIVA
Ga0335028_0008449_724_1380	F005697	GGCGG	MGFLDNYEASRERLERWLATYKNGRIETRIVEFSAEKGYVLVEAKAFRNQEDTQPAGIDYAYGYQGAYQPNMKRWFVEDTVTSAIMRVQQLVMGGAERSTKEIMAQVETTPAKIANTDTTYDYWTTKHGDVPSYKTAGEAEQSGIPSFGSSMDEIAKQLGGQLVEEAPKCVHGHRIWATGKKKNGEDWGAYRCTEKNRNEQCQPIWYVFGSNGKWRAQ