Scaffold Ga0335028_0006876

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0006876
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8033
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F004255	Metagenome / Metatranscriptome	446	Y
F024290	Metagenome / Metatranscriptome	206	Y
F048261	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0006876_2283_2552	F024290	AGGA	MTLEDILEEYGQEVLDTYYELFPDKNVSKFGDRCCGFVGSYDDFLEDVYHSTGSDELETIEDFANGVFLEYYYYCEKTATGFVFYNEER
Ga0335028_0006876_2940_3494	F048261	GGAGG	MDEPLNHKLDVSKIKTLTDVKNVFECMSLISNASEGYEKYELLKQYFTIPNEPQELKLELPRKSLEEISQEFDEKIDKQIEDVEYKFAQLKYYQEYQFSKKITRIIEDIEYVRKNGSFPAKLDYSKLTATGSNITSNFIIKSGGKEVGYYTFGNGYLKYYMNKKPTAISRWFMKNCLSFVWVDT
Ga0335028_0006876_4623_4841	F001881	AGG	MNTGETKMSDRSQEFMSFVWDQRNNQGADTEEKLVAAILSLAANYVISYNAQDGRVVLDKNDLLQLAEELKQ
Ga0335028_0006876_616_789	F004255	GGAGG	MNEKSKIFYNIWTCAYRRRTLYKGTAREHREHETIRMCLDMKDVKFYQFDTEKPRYV