NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335028_0000289

Scaffold Ga0335028_0000289


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0000289 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38333
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (73.53%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009961Metagenome / Metatranscriptome310Y
F043943Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0000289_14568_15077F009961GGAGGMTVDYKIDAMFELRKFLWAQLKLTGMFNQNDYYSDNLGAEIIPIVPVQQLPEMDQFLNGKKHIVYDKIGLSYEENWLICCEKVLFTIYSTDVTEIYEMRNLMTDLFRRMDESAKDVNSSKTSNKLIFHSIHITETSPIEPSQELQGFLSADVILEVKYSRVTDRLGRFA
Ga0335028_0000289_25081_25548F043943GGAMGYPLTLPVGSILYFDTGTDAVTPTWTKVSEHNRSSINIDVDRFEKTQRMSNGSLRKIWIADKKNISSSWSNLPTYSTLTVDGGMGAEDIRAFYLNKGKGTFKIKISYNAVSARDEIMTASFTSCTFSISKRNVRSSATAIPQEFWDVSLSLEEV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.