Scaffold Ga0335028_0000192

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0000192
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46122
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (75.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044971	Metagenome	153	Y
F088503	Metagenome	109	Y
F102805	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0000192_35639_36040	F102805	GGA	MIEQEPAVTLADALARATVAESEVARLQRGIALEIAASDRRAARKLSILRLIFIGIAALMGFLGVLTLINWYVPGSVDADGIGSAYFQMSKDILLVMTGILGSAMANVFDGGQRAGGRAGDRAEQAEQPPTEG
Ga0335028_0000192_36043_36339	F044971	N/A	MTEPLEVAASNSTIGLPTAWRIVTVIGSLASTIVLVSFGFAADLVREEWRELRSEVREMRQRLDSMPDGATLNRLSDDVQDLGRRVDRLESQINNWDE
Ga0335028_0000192_36332_36577	F088503	GAGG	MLKLTHSKGSLNLGLTGGAIVGSLIPIIATVATGGLAAVGLPLWIALGGAVSGLLAGNVEMKSLVDRSLDADAAKTGQQND