Scaffold Ga0335028_0000119

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0000119
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61272
• Total Scaffold Genes: 103
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (82.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F054866	Metagenome	139	Y
F056420	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0000119_15788_16081	F000332	AGGCGG	VKWVVLALIIVCLLVGAEAKVGCHVREFWSIAWTIHNPSERHQQMSMWLTNNVRFCRSQDLTVIWNNLSEWAGTADSAELRTKVIHAYKEALEREKK
Ga0335028_0000119_36012_36167	F056420	GAG	MITLSDLEEHLAFLLAEDKVCFDEGDWDRLDRIRLAIDDTRKQIKKEEKQP
Ga0335028_0000119_36501_36734	F054866	GAGG	MKYTIRHGSIAAVQHVATPEGREVTVTDSNEDPHKWNLPLEVQAAVNRQFGIIFALPYERRQGFIDNSIPFDVEVTQ