Scaffold Ga0335028_0000074

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0000074
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78686
• Total Scaffold Genes: 116
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (80.17%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001229	Metagenome / Metatranscriptome	741	Y
F002489	Metagenome / Metatranscriptome	554	Y
F008132	Metagenome / Metatranscriptome	338	Y
F036238	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0000074_24128_24637	F000258	GGAGG	MVNYRVDAMLELRKYLWQKLKDADIFTASDYYSDSIGDEIVPIIPVQQSPELNHFLSGKKHIVYDKIGMSYEDLWAICCEQVLFTIYSTDINDINEIRNFMTDLFRRVDESARDVNNWTNLSDKFQFYSIFIADISPAAPSEELQGFLSTDIVLEIKYSRLSDSNGRFI
Ga0335028_0000074_25409_25807	F001229	N/A	MKLDVYKQFDAQDIETGSIVKEWVYYKTLDCHAKGIVSNSATTRSSDTQIFSNKYVNDQVVQIRTSEKLTLREKITNIRDSQGNCIWTELNFPTDTPTVFEVVGTTPLTDPFGRVLGYNSTTKRSENQQIGL
Ga0335028_0000074_62271_62483	F002489	AGG	MENEQRSSDLEDNLPMVNYIMLHRIYDLLTIIANKLVGPEDTSKMVSYHEEGYLLGPAPSYSAPDEETLF
Ga0335028_0000074_64065_64250	F008132	AGGAG	MTKWDTIQADVADQYAHLDEEEALMEWLGEEEDVFGFAKAIEIDHLTDEQLDEVFNMFGD
Ga0335028_0000074_71269_71418	F001043	AGGAG	MGDTYQDGFTDGARWAREEITERLREIDVYDIDTWLLDKLADMIEGGKL
Ga0335028_0000074_71621_72022	F036238	AGGCGG	MGDRANFGFRQSNGETIVLYGHWAGYNMLAKLADAVDKARPRWTDESYATRICISQLVGDDWNSETGWGLQVNSISDNEHKIPLIDWATQTFSLHEEAPWSESTEYKVRGMLDTPIFDMSLDSFVKKYSAALV
Ga0335028_0000074_73849_73986	F000441	AGGAGG	MSDDYINDQLNKAQKLLWGGSETENIEAHNIISKLIKDRVEQINL