Scaffold Ga0335028_0000028

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0000028
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 111404
• Total Scaffold Genes: 149
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (14.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014975	Metagenome / Metatranscriptome	258	Y
F024553	Metagenome / Metatranscriptome	205	Y
F037733	Metagenome / Metatranscriptome	167	Y
F040094	Metagenome	162	Y
F051118	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0000028_24346_24522	F037733	N/A	MAASKSMTAGKAKKSGAPRKAPKVAPPKPINGNYMKEADVIRNRKSAQQPMKAKRLAK
Ga0335028_0000028_29609_29851	F014975	N/A	MERLFNQYKNMLIVHPKYKGYVCGYNDAHIILAVETKDDKNFWRKLQNPYIMEEYKDTKYRYVFEDERELVKQSVNGNSK
Ga0335028_0000028_30601_30804	F051118	N/A	MCNRDILEAIIEEVGSDKAAEFCHLASLMYDIKYQASKSKDPLTEYDFERVWWLDAGVALNKQLIID
Ga0335028_0000028_52145_52501	F024553	N/A	MATLKKEIQDVIDNTSDVLYREEIYINGKHEYDYHKLDATPQATVHTLYFSDYIEWAENVRKTVAMQLVDTGNGIELIGINSKKEINYLEAEQLHILLRLSSSHGVYQITEPAPKREF
Ga0335028_0000028_61348_61503	F040094	N/A	MRPRVNKGTLVASTDRFKAIKAKRLIVEVIYNFRNGIIRERTIDIRQTINQ