Scaffold Ga0334990_0035007

Overview

Basic Information

• Taxon OID: 3300034068
• Scaffold ID: Ga0334990_0035007
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2685
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009503	Metagenome / Metatranscriptome	317	Y
F012452	Metagenome	280	Y
F105039	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334990_0035007_1097_1546	F105039	N/A	MVAAVKITSDKGQLLDLPRSYNNSSFMIYLAELAESIGSEWAVAKYFGLPFDPFEDKGKRKADVGAGIEVRWTKYELGQLIVYEYDRPTDIAVLVTGEAPNYYIAGWIPVTMAQKPRYRHTKQPTWWVTQINLQPIENLRKSNYGTSAI
Ga0334990_0035007_1773_2444	F012452	GAGG	MAFLDNYEGNKERTDRWIATYPEGRLQAHIVEFNAEKGYILVQAKAWRNQNEIEPAGIDYAYGFVAAYNPNMKRWFVEDTTTSALMRVMALVMGGTEKATRETMEQVEKLSTKVAIADVKADYDYWTTKHGDVPSYATAAEAEQSGIPSLGSSIDEIANQLGGQLVEEKPRCEHGTRVWKTGESAKTGKAWGGYFCTEKSKANQCEPVWYQLGSTGQWVVRLP
Ga0334990_0035007_955_1116	F009503	GAGG	MEQVQFECRICKKVTRQLVHKITDNLPHGVEVIQCTKCEVMGVAQIGGKDADL