NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334990_0030235

Scaffold Ga0334990_0030235


Overview

Basic Information
Taxon OID3300034068 Open in IMG/M
Scaffold IDGa0334990_0030235 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2892
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F003690Metagenome / Metatranscriptome473Y
F004840Metagenome / Metatranscriptome421Y
F009143Metagenome / Metatranscriptome322Y
F017995Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0334990_0030235_1005_1172F017995AGGMSKMKQYIEIIAANCDECGGAGFVFFGDENTYDVEPCSCIDEISDELNVDWVNNV
Ga0334990_0030235_1767_1961F001562GGAMKSQLEKDLEIKESFIDLLNDCYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAELEDE
Ga0334990_0030235_2072_2224F003690GGAMIENGLELLLSEYGLELDSFLGSIYIPWHTILITTALLIAYKIYKRKKNK
Ga0334990_0030235_2224_2394F009143AGGAGMMTKWDTIQADVADAYTYLDEEEMYNKALEEGAIDLDADDFDEDELHKSLTLDWDN
Ga0334990_0030235_809_1012F004840N/AMYKLTCAYDSNAPHWSAEYENEFGAWENFFRFTDWGMANEYSTVNLSTPTGKMYTKLFYRSGKVVVK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.