Scaffold Ga0334990_0005184

Overview

Basic Information

• Taxon OID: 3300034068
• Scaffold ID: Ga0334990_0005184
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7126
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F033434	Metagenome / Metatranscriptome	177	Y
F076099	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334990_0005184_1130_1492	F004133	N/A	MGFMKYTKEITDKLIADYRSGVAVADIATTLDVPERSVIAKLSSLGVYLKKSYVNKRGEVPVKKSEHIERIAELLQVDEELLESLEKVNKTVLKLIENKLAQADPKLHHTRQTDHLFAEI
Ga0334990_0005184_351_1142	F033434	N/A	MLFKKQEIHSLDFSGTEGMNVEAWETWAEQMQLSHLHTWLLPQLVAWYGSWTLVKVGDTIDCLETVKANCPDPKSRAFYMLTRIKRSLLLATQTKFPDYASLTPLILMGQKRMQGVDYEAWRSASGLQYILEPRLLSAVILEPADLEEVNSLGSERLIEIQTQGLTTKTGKTAGSRKPAKSTWSLSGIQDTEIGHLPKLTQTILTQCWLAHPELRTPYMILDFNNWDSIPQPLISNNLFKEVVSTSTKQDSKKDMANLMPWDL
Ga0334990_0005184_6220_6372	F076099	AGG	MYQVNKGINIDYAETLIKDFLAEGYNLYDIVDIMQIPLRQILDILTKKTH