NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334990_0004968

Scaffold Ga0334990_0004968


Overview

Basic Information
Taxon OID3300034068 Open in IMG/M
Scaffold IDGa0334990_0004968 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7290
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058094Metagenome / Metatranscriptome135Y
F082584Metagenome / Metatranscriptome113Y
F087098Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0334990_0004968_2183_2455F058094N/AMSQISFDPLTGNMVSTTAQVAQLDSSGQVSSSMIPDDFDDVQRFDTVAAFPPEGVVARIYFPADTNIPHRWDPPTLSYIPIVADSDGGEF
Ga0334990_0004968_2458_2745F087098N/AMSNPTVQIAARSSSGIVQPVQATPDGALRVTTGFAVPLYDKFEIFKVGATNNTDFTEYSFLGTAVARIRMTYFGGVPATDNAQLQTSFIQYPPFA
Ga0334990_0004968_892_1260F082584N/AMATVLKLLRTTVPGRVPTAAQVAQGSLALNLADRRLYSKDHTNEVFRLARPRDPSDYQLLHAVDGDHLYLGRLAWADFPATGPAEDSTAWTIYKITTNSAGDVVSEQSATGAWSSKESLTYS
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