Basic Information | |
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Taxon OID | 3300034068 Open in IMG/M |
Scaffold ID | Ga0334990_0002792 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9927 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (85.19%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000263 | Metagenome / Metatranscriptome | 1424 | Y |
F000441 | Metagenome / Metatranscriptome | 1136 | Y |
F000868 | Metagenome / Metatranscriptome | 853 | Y |
F001019 | Metagenome / Metatranscriptome | 804 | Y |
F001125 | Metagenome / Metatranscriptome | 769 | Y |
F002935 | Metagenome | 519 | Y |
F003422 | Metagenome / Metatranscriptome | 487 | Y |
F031497 | Metagenome / Metatranscriptome | 182 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334990_0002792_113_490 | F031497 | AGGCGG | MSKTQEIKVAESLVNLMDDHWFNPTIFGRYLAEQPIYTIDRVMEMIVSVIAEQAKMYDVYSNQGTYTEGLNLANELNECIKAYQQDNNLVNLKLPSRSYKVKREESKERTYQFGWREEKDPFSQP |
Ga0334990_0002792_1277_1507 | F001019 | AGG | MTHYEPSLEILEMEYSCSPGGVDTFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEA |
Ga0334990_0002792_1504_1779 | F000263 | GAGG | MNQEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLADALEQETLSEEAMDSMVRTECEGRLDTLVELYNLTYQLSFAIGERQGQK |
Ga0334990_0002792_2506_2742 | F000868 | GAGG | MSSFLENENEMLIDAIFSEIGEQLVEDWMNSNLDEGQLYADWCVADMSNSNYLKGRFNQFHNLSPTDNYYLQWDENAE |
Ga0334990_0002792_3867_4235 | F001125 | AGGCGG | MGDRANFGFRDSKENIVFLYGHWAGHRMLENLADAVQIAHPRWNDEAYATRIAISQMIGDEWPSETGWGISVNELADNEHKVPIIDWKNKTFTLMEEDLQTVVFSTSLEAFVAKYCSQLSMV |
Ga0334990_0002792_4777_5430 | F003422 | N/A | MSTDLVSTKYTFACDPDECDCLIELTSSDGFGFPSGVMQITCPCGRKPVLLSAVTATIAPTNQTKEETMEPTTTPIPESYNSNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNGRQAQKQANLYLSKIDTVKDIITEAYADSDDQETLRSIAEALDIPLTRTVEWSASVEVSGTIELDLLSDYDTDIESEITDALYVEAQNGNIEIVDQEVCNVREN |
Ga0334990_0002792_5427_5855 | F002935 | GAGG | MSYERTKGYTGNVLDGKKLAKIANDIYRAQYSNDFSECTVDNLLLIELEEKNVFGDPKYAVLCSEGVGWEQDEYGCLEIPTNIGQMGLWNGRVFISVETVKSCQTIFKEDVSNYIRTFGSRLDSNCSLWQSKMSVEPVTILG |
Ga0334990_0002792_834_980 | F000441 | AGGA | MKMSDQYINDQLNTAQKLLWGGSETENIEAHNIIAKLIKDRIEQVNLS |
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