NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334990_0002792

Scaffold Ga0334990_0002792


Overview

Basic Information
Taxon OID3300034068 Open in IMG/M
Scaffold IDGa0334990_0002792 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9927
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (85.19%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000868Metagenome / Metatranscriptome853Y
F001019Metagenome / Metatranscriptome804Y
F001125Metagenome / Metatranscriptome769Y
F002935Metagenome519Y
F003422Metagenome / Metatranscriptome487Y
F031497Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0334990_0002792_113_490F031497AGGCGGMSKTQEIKVAESLVNLMDDHWFNPTIFGRYLAEQPIYTIDRVMEMIVSVIAEQAKMYDVYSNQGTYTEGLNLANELNECIKAYQQDNNLVNLKLPSRSYKVKREESKERTYQFGWREEKDPFSQP
Ga0334990_0002792_1277_1507F001019AGGMTHYEPSLEILEMEYSCSPGGVDTFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEA
Ga0334990_0002792_1504_1779F000263GAGGMNQEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLADALEQETLSEEAMDSMVRTECEGRLDTLVELYNLTYQLSFAIGERQGQK
Ga0334990_0002792_2506_2742F000868GAGGMSSFLENENEMLIDAIFSEIGEQLVEDWMNSNLDEGQLYADWCVADMSNSNYLKGRFNQFHNLSPTDNYYLQWDENAE
Ga0334990_0002792_3867_4235F001125AGGCGGMGDRANFGFRDSKENIVFLYGHWAGHRMLENLADAVQIAHPRWNDEAYATRIAISQMIGDEWPSETGWGISVNELADNEHKVPIIDWKNKTFTLMEEDLQTVVFSTSLEAFVAKYCSQLSMV
Ga0334990_0002792_4777_5430F003422N/AMSTDLVSTKYTFACDPDECDCLIELTSSDGFGFPSGVMQITCPCGRKPVLLSAVTATIAPTNQTKEETMEPTTTPIPESYNSNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNGRQAQKQANLYLSKIDTVKDIITEAYADSDDQETLRSIAEALDIPLTRTVEWSASVEVSGTIELDLLSDYDTDIESEITDALYVEAQNGNIEIVDQEVCNVREN
Ga0334990_0002792_5427_5855F002935GAGGMSYERTKGYTGNVLDGKKLAKIANDIYRAQYSNDFSECTVDNLLLIELEEKNVFGDPKYAVLCSEGVGWEQDEYGCLEIPTNIGQMGLWNGRVFISVETVKSCQTIFKEDVSNYIRTFGSRLDSNCSLWQSKMSVEPVTILG
Ga0334990_0002792_834_980F000441AGGAMKMSDQYINDQLNTAQKLLWGGSETENIEAHNIIAKLIKDRIEQVNLS

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