Scaffold Ga0334990_0002792

Overview

Basic Information

• Taxon OID: 3300034068
• Scaffold ID: Ga0334990_0002792
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9927
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002935	Metagenome	519	Y
F003422	Metagenome / Metatranscriptome	487	Y
F031497	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334990_0002792_113_490	F031497	AGGCGG	MSKTQEIKVAESLVNLMDDHWFNPTIFGRYLAEQPIYTIDRVMEMIVSVIAEQAKMYDVYSNQGTYTEGLNLANELNECIKAYQQDNNLVNLKLPSRSYKVKREESKERTYQFGWREEKDPFSQP
Ga0334990_0002792_1277_1507	F001019	AGG	MTHYEPSLEILEMEYSCSPGGVDTFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEA
Ga0334990_0002792_1504_1779	F000263	GAGG	MNQEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLADALEQETLSEEAMDSMVRTECEGRLDTLVELYNLTYQLSFAIGERQGQK
Ga0334990_0002792_2506_2742	F000868	GAGG	MSSFLENENEMLIDAIFSEIGEQLVEDWMNSNLDEGQLYADWCVADMSNSNYLKGRFNQFHNLSPTDNYYLQWDENAE
Ga0334990_0002792_3867_4235	F001125	AGGCGG	MGDRANFGFRDSKENIVFLYGHWAGHRMLENLADAVQIAHPRWNDEAYATRIAISQMIGDEWPSETGWGISVNELADNEHKVPIIDWKNKTFTLMEEDLQTVVFSTSLEAFVAKYCSQLSMV
Ga0334990_0002792_4777_5430	F003422	N/A	MSTDLVSTKYTFACDPDECDCLIELTSSDGFGFPSGVMQITCPCGRKPVLLSAVTATIAPTNQTKEETMEPTTTPIPESYNSNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNGRQAQKQANLYLSKIDTVKDIITEAYADSDDQETLRSIAEALDIPLTRTVEWSASVEVSGTIELDLLSDYDTDIESEITDALYVEAQNGNIEIVDQEVCNVREN
Ga0334990_0002792_5427_5855	F002935	GAGG	MSYERTKGYTGNVLDGKKLAKIANDIYRAQYSNDFSECTVDNLLLIELEEKNVFGDPKYAVLCSEGVGWEQDEYGCLEIPTNIGQMGLWNGRVFISVETVKSCQTIFKEDVSNYIRTFGSRLDSNCSLWQSKMSVEPVTILG
Ga0334990_0002792_834_980	F000441	AGGA	MKMSDQYINDQLNTAQKLLWGGSETENIEAHNIIAKLIKDRIEQVNLS