Scaffold Ga0334990

Basic Information
Taxon OID	3300034068 Open in IMG/M
Scaffold ID	Ga0334990_0001566 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13260
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (11.11%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F021297	Metagenome / Metatranscriptome	219	Y
F076091	Metagenome / Metatranscriptome	118	Y
F082694	Metagenome	113	Y
F085382	Metagenome	111	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

219

Metagenome / Metatranscriptome

118

Metagenome

113

Metagenome

111

Protein ID	Family	RBS	Sequence
Ga0334990_0001566_10649_10897	F076091	N/A	MLGIYVGVPEDVLLQYKQEALGDLGKAVTSYSDSGTSVNKQFGLPPAQRIQEINYALSRIDSKRYGGAHTSVQKNWDMRVDL
Ga0334990_0001566_1104_1418	F021297	N/A	MSDTVTLSQGNTFACTFVWTPGATGPANLLTTTLTSTVEDKCGNLYELTITKALDGLSFTVAYPGSTADWALGLGRWDIKFVFPGGGISRTEVFRVQVIDSVTV
Ga0334990_0001566_5221_5658	F082694	N/A	MGTKSARHIVEAAVASHLTAQVELTGVNIYKGDSADTNELPKAIVLCDSARLPNDFPDGLGNYSCTVRVTLLDSADDVTLTDHRARMAAIAGAMQDLEALQAVFTLQADAHCYDITPLSEDEGVNERSWASVLVYDILVVVNPEG
Ga0334990_0001566_6625_6996	F085382	N/A	MSLYGTFLADYQLLLADIGVPATVGANLFLVGLSSPMNTPKFDAGGFTEEKMWTVRFAAATAPWTASDGRVGGQVATIVSGVPMATLAPGKKLTVNGQVLRVKGQSYKQASAVIELTCIDDNQ

Protein ID

Family

RBS

Sequence

Ga0334990_0001566_10649_10897

N/A

MLGIYVGVPEDVLLQYKQEALGDLGKAVTSYSDSGTSVNKQFGLPPAQRIQEINYALSRIDSKRYGGAHTSVQKNWDMRVDL

Ga0334990_0001566_1104_1418

N/A

MSDTVTLSQGNTFACTFVWTPGATGPANLLTTTLTSTVEDKCGNLYELTITKALDGLSFTVAYPGSTADWALGLGRWDIKFVFPGGGISRTEVFRVQVIDSVTV

Ga0334990_0001566_5221_5658

N/A

MGTKSARHIVEAAVASHLTAQVELTGVNIYKGDSADTNELPKAIVLCDSARLPNDFPDGLGNYSCTVRVTLLDSADDVTLTDHRARMAAIAGAMQDLEALQAVFTLQADAHCYDITPLSEDEGVNERSWASVLVYDILVVVNPEG

Ga0334990_0001566_6625_6996

N/A

MSLYGTFLADYQLLLADIGVPATVGANLFLVGLSSPMNTPKFDAGGFTEEKMWTVRFAAATAPWTASDGRVGGQVATIVSGVPMATLAPGKKLTVNGQVLRVKGQSYKQASAVIELTCIDDNQ

NMPFamsDB