Scaffold Ga0334990

Basic Information
Taxon OID	3300034068 Open in IMG/M
Scaffold ID	Ga0334990_0000477 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034068 Open in IMG/M

Scaffold ID

Ga0334990_0000477 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24695
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (21.95%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

24695

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (21.95%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066778	Metagenome / Metatranscriptome	126	Y
F070109	Metagenome / Metatranscriptome	123	Y
F072341	Metagenome / Metatranscriptome	121	N
F077297	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334990_0000477_20051_20797	F072341	N/A	MSKELAASVQQSFNRSLSAEERAIAECISSPKLHTLNEQEFRELIAQAAVINSIKALPSDIEVTLLQQLTQNTYRSTSIKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKAKVWRELNKALVLPEAEIKRAEPTDPLNVLHADVDRWNQRKEIWVEISAPYNCQRLFKSGIYKKSMWAPEVWARFEDIAKQKVEGKFKASNKVILGESAQAEFDGLQKIELSRLIYIDIIKQINKEKE
Ga0334990_0000477_22205_22858	F066778	GAG	MRAGAHTFKTILMSYTREPNWDKLKPSIDWDEQEEKLADKLNKYINKKQTVMNQSTVKSQKFVRTWDGPSGAIHYFDLLLENGEVGQIGVKDMNSPKIAVGATLHYTAEERTGPTGKKTTNFKMQNPMQYSGPSSAPSGAVNSSSNYRKESPDVQNSISKSVALNNAVLFCKEQKGSKPGDVLDTAEIFLAWLKGEAVEAVQIKAVTNESADDEMPF
Ga0334990_0000477_23918_24217	F070109	GAG	VSLTTSEVRSLLKLKAERDYLLEQNLLLSKSDSIASFVIKDQQKSIDAYTIANEQKAQQLVTVQQELYKEAARKESWRSVALIGIPISFVGGIIFNLLF
Ga0334990_0000477_24201_24557	F077297	N/A	MTHQTKTQIKLAVVFGITVFICILMQLMYIRIKEDEKALQGYERRADRATHVIDSLEATNFQRMQEIAQLNMQIIHNTQIYEANISAIDSLDRNGLRKAMHNLLTSLAGERYPGESND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334990_0000477

Overview

Ecosystem & Geography

Associated Families

Sequences