Scaffold Ga0334990_0000281

Overview

Basic Information

• Taxon OID: 3300034068
• Scaffold ID: Ga0334990_0000281
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31124
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (9.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032099	Metagenome / Metatranscriptome	181	Y
F041778	Metagenome	159	Y
F070121	Metagenome	123	Y
F097343	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334990_0000281_1353_1646	F032099	N/A	MEDKRKNNGGHKTAGRKTKVEEAKVNNIFIQALKELYSKDTEEETKIAFVKNTLMDSQRGQLFIAEHIFGKPKEIIEATHNVNDFNIKDIFKVGNKS
Ga0334990_0000281_14411_14722	F041778	N/A	MNIYKLNYLDKETAIKDFIEKGVFIEVEITDKEIFLSYGKGIQAVVEIGKIVLTNETEDENFKEFTAPVFADGYAYDIMSEQKIDFGKNEVFPKNPIHDFAGV
Ga0334990_0000281_6169_6303	F070121	N/A	MKSKQSPLQRINRIIDFNWKRGNNKESVNEVYRKIINEKLAKKN
Ga0334990_0000281_9727_10014	F097343	N/A	MQTTIKTHLEELQTSAARMLVLNSDNKMLISYFKDLTEKLLYLKELVNMDSKYNWIEIENLMLKLKEIDTELTHINIEIQIAEITTEKKSAYIKK