Scaffold Ga0334990_0000277

Overview

Basic Information

• Taxon OID: 3300034068
• Scaffold ID: Ga0334990_0000277
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31242
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (22.73%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F066778	Metagenome / Metatranscriptome	126	Y
F070109	Metagenome / Metatranscriptome	123	Y
F072341	Metagenome / Metatranscriptome	121	N
F077297	Metagenome / Metatranscriptome	117	Y
F082692	Metagenome / Metatranscriptome	113	Y
F093876	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334990_0000277_10884_11543	F066778	AGTAG	MRAGAHTFKTILMSYTREPNWDKLKPSIDWDEQEEKLASKLDKYINKNKIKQTVMNQSTVKSQKFVRTWDGPSGAIHYFDLLLENGEVGQIGVKDMNSPKIAVGATLHYTAEERTGPTGKKTTNFKMQNPMQYSGPSSAQGGAVNSAVNYRKESPDVQNSISKSVALNNAVLFCKEQKGSKPGDVLDTAEIFLAWLKGESIIETKLDLTNEISNDEMPF
Ga0334990_0000277_12521_12841	F070109	N/A	LPGKDTLVTLTTEQVRSLLKLKIERDYLKSQVVLLTKSDSIASYVISDQAKSIDEYSVLNERMAINLSAAQQERDKESARKESWRNTALIGIPISFIGGIIFTVFF
Ga0334990_0000277_12804_13160	F077297	N/A	MTQQAKTQIKAAAVMVVALSICITIQLLYIALKDSKKAIEGYERRADRATHVIDSLEATNVQRMLEIEQLNVQLERNKERYEANISAIDSLDRNGLRRAMHNLLSSLAGERYPGNTND
Ga0334990_0000277_13132_13377	F047677	N/A	MKWLRSIFSNEGDASSKRVASIVTLLVCINLSYIGTFTEYKCPEYMFDGLLILAGGGLGLTVIESIFGKKKSNDSTGQDSN
Ga0334990_0000277_22289_22486	F082692	N/A	MTNPQEDIVISMTLLRAGAQGKTKTFQHAVGSHHAKLKVWQIRAINYTIVIGLLSLITLTIYSIV
Ga0334990_0000277_8121_8471	F093876	N/A	MNLFKRKKEPIDLNAKLLPELCSCTIIQWNYSDDIGLEATYAEDIPFMFDARKCVGIQAEVEFRKDGTYYVGERTLALMQGIDNAVVIDVPYNEFKKHFQELKSNIITNDYIISRG
Ga0334990_0000277_8752_9414	F072341	AGAAG	MSSDKLICLNEQEFRELIAQAAVVNGIKSLPSDIEVSLLKQVVLTTYMQLSIKDWQNAFLYNAIGKDFDRIDAFNLFSVAFMSDVFKRYEEYKSKVWRELNKALILPEPEIIRAEPTDPLTALHADVERWQDGKETWVEISAPYNCQRLFRQGIYKKSEWDAEVWARFDDLAKQKTEAKFKASNRVVLGPSAQEEFDGYQKIELSRLIYIDIIKKIIKQS