Scaffold Ga0335019_0258552

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0258552
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1106
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008552	Metagenome	331	Y
F021537	Metagenome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0258552_33_488	F008552	AGAAG	MSVMIISFEASASVDTTLFGYFSMEYDPEFFSDIKENLTEIPKNQPIAFKLDTDNVKLLQGAFHTIRRIICVPDIEQHKFTYVFKRNFQAGTAKKFKYAKLHIDKDYFYFTGHHENLDGTKPVEFQSLNFDARFIDTIQNQFIKHQENMVN
Ga0335019_0258552_820_1104	F021537	GGAG	MQTLEQKIKHLKKTIETLWHGVSETKEGDYPRIISLYKEVLMHDYHDADSWENMIWLMWSMAINKQDTVWLFQAEKFAKRYLSLNPNGYRAYEYL