Scaffold Ga0335019_0216539

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0216539
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1232
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008943	Metagenome / Metatranscriptome	325	Y
F037700	Metagenome / Metatranscriptome	167	Y
F091921	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0216539_117_335	F008943	GGAGG	MKFDGFDWVFLTIPIFIIVAAAVLTYDAQQQRTLFQQTYNKNLECRQALKDQTVGRVNEICGDVPVIGDFVK
Ga0335019_0216539_332_499	F091921	GGAG	MIELRIVEHELGVKPDIQYRFMLFSVGQGGYLCPPNPDMKWSEWRTAEWVKAEDT
Ga0335019_0216539_950_1168	F037700	GGA	MKKYRIKKETYGNATKYFPQERWFFRWFNIFAFDVYFDGGYDTLEKARKKLCEYCREPVVEYLNFDPNEDCK